Oct 26, 2022

New Publication from Dr. Benjamin Haibe-Kains and Linda Dr. Penn

Dr. Haibe-Kains and Dr. Penn
Dr. Benjamin Haibe-Kains and Dr. Linda Penn

MBP scientists Dr. Benjamin Haibe-Kains and Dr. Linda Penn have co-authored a new Nature Communications article entitled ‘Computational pharmacogenomic screen identifies drugs that potentiate the anti-breast cancer activity of statins’.

Article Abstract
Statins, a family of FDA-approved cholesterol-lowering drugs that inhibit the rate-limiting enzyme of the mevalonate metabolic pathway, have demonstrated anticancer activity. Evidence shows that dipyridamole potentiates statin-induced cancer cell death by blocking a restorative feedback loop triggered by statin treatment. Leveraging this knowledge, we develop an integrative pharmacogenomics pipeline to identify compounds similar to dipyridamole at the level of drug structure, cell sensitivity and molecular perturbation. To overcome the complex polypharmacology of dipyridamole, we focus our pharmacogenomics pipeline on mevalonate pathway genes, which we name mevalonate drug-network fusion (MVA-DNF). We validate top-ranked compounds, nelfinavir and honokiol, and identify that low expression of the canonical epithelial cell marker, E-cadherin, is associated with statin-compound synergy. Analysis of remaining prioritized hits led to the validation of additional compounds, clotrimazole and vemurafenib. Thus, our computational pharmacogenomic approach identifies actionable compounds with pathway-specific activities.

View the article on the Nature Communications website.